Home Info Info Array 1

Info Array 1

Array I layout

plate

DNMT3B

PODXL

ZFP42

ACTC1

BRIX1

CD9

CDH1

FGF4

FOXD3

GABRB3

GRB7

LEFTY1

NODAL

REST

RUNX2

TERT

ALDH1A1

ALDH2

APC

CDH2

FGFR1

HDAC2

KAT2A

KAT7

KAT8

PARD6A

COMMD3

IL6ST

LIFR

SFRP2

OCT4

SOX2

KLF4

LIN28A

NANOG

NR5A2

UTF1

ALPL

GDF3

TDGF1

CCNA2

CDK1

CDC42

DPPA2

DPPA3

FGF2

HSPA9

MYBL2

OTX2

SOX15

TBX3

TCF3

CD34

GJB2

KRT15

COL1A1

COL2A1

EMX2

FABP7

NCAM1

NES

NUMB

OLIG2

PECAM1

SYCP3

PAX6

TUBB3

FGF8

FN1

GFAP

NEUROD1

BMP4

GATA2

HAND1

MESP1

HBB

RUNX1

FOXA2

GATA4

HHEX

HNF4A

SOX17

EOMES

KLF2

TFCP2L1

DNMT1

DNMT3A

DNMT3L

XIST

GAPDH

B2M

SDHA

HPRT1

NO-RT control

PCR positive control

Cartilage	Neuronal Stem Cell	Cardiomyocyte	Germ cells	Other Reprogramming Factors	Mesoderm	Endoderm	Naive gene markers	House keeping genes
iPSC Markers	Other iPSC-Related Genes	Reprogramming Factors	Ectoderm	Reprogramming Enhancers & Inhibitors	ESC Markers	Other ESC-Related Genes	Keratinocyte	Blood Stem Cell

list of genes

Function	#	Array position	Gene Symbol	Gene Name	Description	GeneBank
iPSC Markers	1	A1	DNMT3B	ICF, ICF1, M.HsaIIIB	DNA (cytosine-5-)-methyltransferase 3 beta	NM_006892
	2	A2	PODXL	Gp200, PC, PCLP, PCLP-1	Podocalyxin-like	NM_005397
	3	A3	ZFP42	REX1, ZNF754	Zinc finger protein 42 homolog (mouse)	NM_174900
Other iPSC-Related Genes	4	A4	ACTC1	ACTC, ASD5, CMD1R, CMH11, LVNC4	Actin, alpha, cardiac muscle 1	NM_005159
	5	A5	BRIX1 (BXDC2)	BRIX, BXDC2	BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	NM_018321
	6	A6	CD9	BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29	CD9 molecule	NM_001769
	7	A7	CDH1	Arc-1, CD324, CDHE, ECAD, LCAM, UVO	Cadherin 1, type 1, E-cadherin (epithelial)	NM_004360
	8	A8	FGF4	HBGF-4, HST, HST-1, HSTF1, K-FGF, KFGF	Fibroblast growth factor 4	NM_002007
	9	A9	FOXD3	AIS1, Genesis, HFH2, VAMAS2	Forkhead box D3	NM_012183
	10	A10	GABRB3	ECA5	Gamma-aminobutyric acid (GABA) A receptor, beta 3	NM_000814
	11	A11	GRB7	–	Growth factor receptor-bound protein 7	NM_005310
	12	A12	LEFTY1	LEFTB, LEFTYB	Left-right determination factor 1	NM_020997
	13	B1	NODAL	HTX5	Nodal homolog (mouse)	NM_018055
	14	B2	REST	NRSF, XBR	RE1-silencing transcription factor	NM_005612
	15	B3	RUNX2	AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD, OSF-2, OSF2, PEA2aA, PEBP2aA	Runt-related transcription factor 2	NM_004348
	16	B4	TERT	CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1, TP2, TRT, hEST2, hTRT	Telomerase reverse transcriptase	NM_198253
	17	B5	ALDH1A1	ALDC, ALDH-E1, ALDH1, ALDH11, HEL-S-53e, HEL12, PUMB1, RALDH1	Aldehyde dehydrogenase 1 family, member A1	NM_000689
	18	B6	ALDH2	ALDH-E2, ALDHI, ALDM	Aldehyde dehydrogenase 2 family (mitochondrial)	NM_000690
	19	B7	APC	BTPS2, DP2, DP2.5, DP3, GS, PPP1R46	Adenomatous polyposis coli	NM_000038
	20	B8	CDH2	CD325, CDHN, CDw325, NCAD	Cadherin 2, type 1, N-cadherin (neuronal)	NM_001792
	21	B9	FGFR1	BFGFR, CD331, CEK, FGFBR, FGFR-1, FLG, FLT-2, FLT2, HBGFR, HH2, HRTFDS, KAL2, N-SAM, OGD, bFGF-R-1	Fibroblast growth factor receptor 1	NM_015850
	22	B10	HDAC2	HD2, RPD3, YAF1	Histone deacetylase 2	NM_001527
	23	B11	KAT2A	GCN5, GCN5L2, PCAF-b, hGCN5	K(lysine) acetyltransferase 2A	NM_021078
	24	B12	KAT7	HBO1, HBOA, MYST2, ZC2HC7	K(lysine) acetyltransferase 7	NM_007067
	25	C1	KAT8	MOF, MYST1, ZC2HC8, hMOF	K(lysine) acetyltransferase 8	NM_032188
	26	C2	PARD6A	PAR-6A, PAR6, PAR6C, PAR6alpha, TAX40, TIP-40	Par-6 partitioning defective 6 homolog alpha (C. elegans)	NM_016948
	27	C3	COMMD3	BUP, C10orf8, RP11-573G6.3	COMM domain containing 3	NM_012071
	28	C4	IL6ST	CD130, CDW130, GP130, IL-6RB	interleukin 6 signal transducer (gp130, oncostatin M receptor)	NM_175767
	29	C5	LIFR	CD118, LIF-R, SJS2, STWS, SWS	leukemia inhibitory factor receptor alpha	NM_002310
	30	C6	SFRP2	FKSG12, FRP-2, SARP1, SDF-5	secreted frizzled-related protein 2	NM_003013
Reprogramming Factors	31	C7	POU5F1 (Oct3/4)	OCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4	POU class 5 homeobox 1	NM_002701
	32	C8	SOX2	ANOP3, MCOPS3	SRY (sex determining region Y)-box 2	NM_003106
	33	C9	KLF4	EZF, GKLF	Kruppel-like factor 4 (gut)	NM_004235
Other Reprogramming Factors:	34	C10	LIN28A	CSDD1, LIN-28, LIN28, ZCCHC1, lin-28A	Lin-28 homolog A (C. elegans)	NM_024674
	35	C11	NANOG	–	Nanog homeobox	NM_024865
	36	C12	NR5A2	B1F, B1F2, CPF, FTF, FTZ-F1, FTZ-F1beta, LRH-1, LRH1, hB1F-2	Nuclear receptor subfamily 5, group A, member 2	NM_003822
Reprogramming Enhancers & Inhibitors	37	D1	UTF1	–	Undifferentiated embryonic cell transcription factor 1	NM_003577
ESC Markers	38	D2	ALPL	AP-TNAP, APTNAP, HOPS, TNAP, TNSALP	Alkaline phosphatase, liver/bone/kidney	NM_000478
	39	D3	GDF3	KFS3, MCOP7, MCOPCB6	Growth differentiation factor 3	NM_020634
	40	D4	TDGF1 (CRIPTO)	CR, CRGF, CRIPTO	Teratocarcinoma-derived growth factor 1	NM_003212
Other ESC-Related Genes: .	41	D5	CCNA2	CCN1, CCNA	Cyclin A2	NM_001237
	42	D6	CDK1 (CDC2)	CDC2, CDC28A, P34CDC2	Cyclin-dependent kinase 1	NM_001786
	43	D7	CDC42	CDC42Hs, G25K	Cell division cycle 42 (GTP binding protein, 25kDa)	NM_001791
	44	D8	DPPA2	CT100, ECAT15-2, PESCRG1	Developmental pluripotency associated 2	NM_138815
	45	D9	DPPA3	STELLA	Developmental pluripotency associated 3	NM_199286
	46	D10	FGF2	BFGF, FGF-2, FGFB, HBGF-2	Fibroblast growth factor 2 (basic)	NM_002006
	47	D11	HSPA9	CSA, GRP-75, GRP75, HSPA9B, MOT, MOT2, MTHSP75, PBP74	Heat shock 70kDa protein 9 (mortalin)	NM_004134
	48	D12	MYBL2	B-MYB, BMYB	V-myb myeloblastosis viral oncogene homolog (avian)-like 2	NM_002466
	49	E1	OTX2	CPHD6, MCOPS5	Orthodenticle homeobox 2	NM_021728
	50	E2	SOX15	SOX20, SOX26, SOX27	SRY (sex determining region Y)-box 15	NM_006942
	51	E3	TBX3	TBX3-ISO, UMS, XHL	T-box 3	NM_016569
	52	E4	TCF3	E2A, E47, ITF1, TCF-3, VDIR, bHLHb21	Transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)	NM_003200
Blood Stem Cell:	53	E5	CD34	–	CD34 molecule	NM_001773
Keratinocyte:	54	E6	GJB2	CX26, DFNA3, DFNA3A, DFNB1, DFNB1A, HID, KID, NSRD1, PPK	Gap junction protein, beta 2, 26kDa	NM_004004
	55	E7	KRT15	CK15, K15, K1CO	Keratin 15	NM_002275
Cartilage:	56	E8	COL1A1	OI4	Collagen, type I, alpha 1	NM_000088
	57	E9	COL2A1	ANFH, AOM, COL11A3, SEDC, STL1	Collagen, type II, alpha 1	NM_001844
Neuronal Stem Cell:	58	E10	EMX2	–	Empty spiracles homeobox 2	NM_004098
	59	E11	FABP7	B-FABP, BLBP, FABPB, MRG	Fatty acid binding protein 7, brain	NM_001446
	60	E12	NCAM1	CD56, MSK39, NCAM	Neural cell adhesion molecule 1	NM_000615
	61	F1	NES	–	Nestin	NM_006617
	62	F2	NUMB	C14orf41, S171, c14_5527	Numb homolog (Drosophila)	NM_003744
	63	F3	OLIG2	BHLHB1, OLIGO2, PRKCBP2, RACK17, bHLHe19	Oligodendrocyte lineage transcription factor 2	NM_005806
Cardiomyocyte	64	F4	PECAM1	CD31, CD31, EndoCAM, GPIIA‘, PECA1, PECAM-1, endoCAM	Platelet/endothelial cell adhesion molecule	NM_000442
Germ Cells	65	F5	SYCP3	COR1, SCP3, SPGF4	Synaptonemal complex protein 3	NM_153694
Ectoderm:	66	F6	PAX6	AN, AN2, D11S812E, MGDA, WAGR	Paired box 6	NM_000280
	67	F7	TUBB3	CDCBM, CDCBM1, CFEOM3A, TUBB4, beta-4	Tubulin, beta 3	NM_006086
	68	F8	FGF8	AIGF, FGF-8, HBGF-8, HH6, KAL6	fibroblast growth factor 8 (androgen-induced)	NM_006119
	69	F9	FN1	CIG, ED-B, FINC, FN, FNZ, GFND, GFND2, LETS, MSF	fibronectin 1	NM_212482.2
	70	F10	GFAP		glial fibrillary acidic protein	NM_002055
	71	F11	NEUROD1	BETA2, BHF-1, MODY6, NEUROD, bHLHa3	neuronal differentiation 1	NM_002500
	72	F12	TH	DYT14, DYT5b, TYH	tyrosine hydroxylase	NM_199293
Mesoderm:	73	G1	BMP4	BMP2B, BMP2B1, MCOPS6, OFC11, ZYME	Bone morphogenetic protein 4	NM_001202
	74	G2	GATA2	DCML, MONOMAC, NFE1B	GATA binding protein 2	NM_032638
	75	G3	HAND1	Hxt, Thing1, bHLHa27, eHand	Heart and neural crest derivatives expressed 1	NM_004821
	76	G4	MESP1	bHLHc5	Mesoderm posterior 1 homolog (mouse)	NM_018670
	77	G5	HBB	CD113t-C, beta-globin	hemoglobin, beta	NM_000518
	78	G6	RUNX1	AML1, AML1-EVI-1, AMLCR1, CBFA2, EVI-1, PEBP2aB	Runt-related transcription factor 1	NM_001754
Endoderm:	79	G7	FOXA2	HNF3B, TCF3B	Forkhead box A2	NM_021784
	80	G8	GATA4	ASD2, TACHD, VSD1	GATA binding protein 4	NM_002052
	81	G9	HHEX	HEX, HMPH, HOX11L-PEN, PRH, PRHX	Hematopoietically Expressed Homeobox	NM_002729
	82	G10	HNF4A	HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha, MODY, MODY1, NR2A1, NR2A21, TCF, TCF14	Hepatocyte nuclear factor 4, alpha	NM_178849
	83	G11	SOX17	VUR3	SRY (sex determining region Y)-box 17	NM_022454
	84	G12	EOMES	TBR2	eomesodermin	NM_005442.3
Naive gene markers	85	H1	KLF2	LKLF	Kruppel-like factor 2 (lung)	NM_016270.3
	86	H2	TFCP2L1	CRTR1, LBP-9, LBP9	Homo sapiens transcription factor CP2-like 1 (TFCP2L1)	NM_014553.2
	87	H3	DNMT1	ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT	DNA (cytosine-5-)-methyltransferase 1	NM_001130823.2 NM_001379.3
	88	H4	DNMT3A	DNMT3A2, M.HsaIIIA	DNA (cytosine-5-)-methyltransferase 3 alpha	NM_175629.2 NM_153759.3 NM_022552.4
	89	H5	DNMT3L		DNA (cytosine-5-)-methyltransferase 3-like	NM_013369.3 NM_175867.2
	90	H6	XIST	DXS1089, DXS399E, LINC00001, NCRNA00001, SXI1, swd66	X inactive specific transcript (non-protein coding)	NR_001564.2
House keeping genes	91	H7	GAPDH	G3PD, GAPD, HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	NM_002046.6
	92	H8	B2M	IMD43	beta-2-microglobulin	NM_004048.3
	93	H9	SDHA	CMD1GG, FP, PGL5, SDH1, SDH2, SDHF	succinate dehydrogenase complex flavoprotein subunit A	NM_004168.3
	94	H10	HPRT1	HGPRT, HPRT	hypoxanthine phosphoribosyltransferase 1	NM_000194.2
NO-RT control (primery GAPDH)	95	H11	NO-RT control
PCR positive control (primery ACTB)	96	H12	PCR positive control