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modified oligonucleotides

modified oligonucleotides

Modified oligonucleotides – options & examples

Our modified oligonucleotides cover end modifications at the 3′ and 5′ ends as well as internal positions.
We offer base analogs, spacers, fluorophores, quenchers, backbone changes and functional groups for applications such as antisense, sequencing, duplex stabilization, structural studies or click-chemistry conjugations.
All modifications are delivered with high purity and can be combined on request (where chemistry allows).

Popular modifications & use cases

Looking for labeled probes? See
RT-PCR dual-labeled probes
or browse all oligonucleotides.

Amino C3Sp

Amino C3Sp Amino C3Sp

The amino group is bound to the 5' end of the oligonucleotide sequence by a three carbon spacer. It is used as an intermediate for further oligo modifications (attachment to special surfaces, conjugation).

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Amino C6sp

Amino C6sp Amino C6sp

The amino group is bound to the 5' end of the oligonucleotide sequence by a six carbon spacer. It is used as an intermediate for further oligo modifications (attachment to special surfaces, conjugation).

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Amino C7sp

Amino C7sp Amino C7sp

The amino group is bound to the 3' end of the oligonucleotide sequence by a seven carbon spacer. It is used as an intermediate for further oligo modifications (attachment to special surfaces, conjugation) while keeping the 5' end free for another possible modification and as a blocker of 3' polymerase extension.

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BBQ650

BBQ650 BBQ650

Quencher suitable for fluorophores having an emission wavelength range from 550 to 750 nm. BBQ-650 may be attached to the 5'end or the 3' end of the oligonucleotide.

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BHQ1

BHQ1 BHQ1

A quencher suitable for fluorophores having an emission wavelength range from 480 to 580 nm. BHQ1 may be attached anywhere within the oligonucleotide sequence.

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BHQ2

BHQ2 BHQ2

A quencher suitable for fluorophores having an emission wavelength range from 540 to 670 nm. BHQ2 may be attached anywhere within the oligonucleotide sequence.

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BHQ3

BHQ3 BHQ3

Quencher suitable for fluorophores having an emission wavelength range from 620 to 730 nm. BHQ3 may be attached to the 3'end of the oligonucleotide.

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Biotin

Biotin Biotin

Biotin may be attached either to the 5' end or the 3' end of the oligonucleotide. The biotin molecule is separated from the 3' end by a sixteen carbon spacer.

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Biotin dT

Biotin dT Biotin dT

Biotin dT is attached with a six carbon spacer at position 5 of the thymine circle. Biotin dT may be attached anywhere within the oligonucleotide sequence except for the 3' end.

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BiotinTEG

BiotinTEG BiotinTEG

Biotin is ligated to the oligonucleotide by means of a triethylene glycol spacer (TEG), extending the distance between the oligonucleotide and the biotin by 15 atoms. Biotin-TEG may be ligated to the 3´, 5´ ends of the oligonucleotide.

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C8-Alkyne-dC

C8-Alkyne-dC C8-Alkyne-dC

It is used for conjugations based on the click chemistry principle. C8-Alkyne-dC may be attached anywhere within the oligonucleotide sequence except for the 3' end.

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C8-Alkyne-dT

C8-Alkyne-dT C8-Alkyne-dT

It is used for conjugations based on the click chemistry principle. C8-Alkyne-dT may be attached anywhere within the oligonucleotide sequence except for the 3' end.

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